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About Dr. Joslynn Lee

Joslynn Lee is an Associate Professor of Biochemistry at Fort Lewis College. She joined the college in 2019. Dr. Lee has a broad background in bioinformatics, with specific training and expertise on next-generation sequencing data and structural genomics. Her current research studies how metals impact microbial community structure and function and how microbial proteins play a crucial role in the uptake and management of metals. Dr. Lee has developed an environmental microbiome research project to increase the accessibility of bioinformatics and genomics education and training in an Indigenous cultural context. Dr. Lee's earlier publications begin in computational chemistry and molecular modeling. 

In the media

• “How Indigenous values permeate my chemistry teaching and research”
• “Bridging science and tradition: Dr. Joslynn Lee inspires the next generation of Native scientists”
• “A small Durango college is trying to reckon with its dark legacy — and help students do the same”
• “Slice of Raspberry Pi”

Selected publications

• Lee, JS, Lowell, JL, Whitewater, K, Roane, TM, Miller, CS, Chan, AP, Sylvester, AW, Jackson, D and Hunter, LE. (2023) Monitoring environmental microbiomes: Alignment of microbiology and computational biology competencies within a culturally integrated curriculum and research framework. Molecular Ecology Resources.
• Hinckley, JL, Bingman, MT, Lee, JS, Bradley, CP, and Cole, CA. (2022) Volatile Profile Survey of Five Apple Varieties Grown in Southwest Colorado from Juice to Finished, Dry-Hopped Cider. Journal of the American Society of Brewing Chemists.
• Network, T. G. D. S. C., Alcazar, R., Alvarez, M., Arnold, R., Ayalew, M., Best, L. G., ... & Xie, X. (2022). Diversifying the Genomic Data Science Research Community. Genome Research.
• Bolyen, E.; Rideout, J.R.; Dillon, M.R.; Bokulich, N.A.; Abnet, C.; Al-Ghalith, G.A.; Alexander, H.; Alm, E.J.; Arumugam, M.; Asnicar, F.; et al. (2019) Reproducible, interactive, scalable and extensible microbiome data science using QIIME2. Nat. Biotechnol 37:852-857.
• Mills, CL, Garg, R., Lee, J.S., Tian, L., Suciu, A., Cooperman, G.D., Beuning, P., Ondrechen, MJ. (2018) Functional classification of protein structures by local structure matching in graph representation. Protein Science. 27(6):1125-1135.  
• Zhang, Y., Lee, J.K., Toso, E.A., Lee, J.S., Choi S.H., Slattery, M.G., Aihara, H., Kyba, M. (2016). DNA binding sequence specificity of DUX4. Skelet Muscle 6(8). 
• Loganathan, R., Lee, J.S., Wells, M.B., Slattery, M.G., Andrew, D.J. (2016) Ribbon regulates morphogenesis of the Drosophila embryonic salivary gland through both transcriptional repression and activation. Dev Biol 409(1): 234-250. 
• Thomas, R., Lee, JS, Chevalier, V., Selesniemi, K., Hatfield, S., Ondrechen, MJ, Sitkovsky, M, Jones, GB. (2013) Design and evaluation of xanthine based adenosine receptor antagonists: Potential hypoxia targeted immunotherapies. Bioorganic & Medicinal Chemistry. 21, 23, 7453-7464. 
• Wang. Z., Yin, P., Lee. J.S., Parasuram, R., Somarowthu, S., Ondrechen, MJ. (2013) “Protein Function Annotation with Structurally Aligned Local Sites of Activity (SALSAs), BMC Bioinformatics. 14(Suppl 3):S13. 
• Parasuram, R., Lee, J. S., Yin, P., Somarowthu, S., Ondrechen, MJ. (2010) Functional Classification of Protein 3D Structures From Predicted Local Interaction Sites. Journal of Bioinformatics and Computational Biology. 8, SI1, 1-15. / 

Awards and higlights

• 2025 Fort Lewis College Achievement Award
• 2023 SACNAS Outstanding College/University Mentor
• 2023 Fort Lewis College “Service to FLC” Alumni Award
• 2023 Kavli Frontiers in Science Fellow
• 2020 Fort Lewis College “Chemistry Department” Alumni Award